artic (or fieldbioinformatics) is a pipeline and set of accompanying tools for working with viral nanopore sequencing data, generated from tiling amplicon schemes.

Features include:

• reference sequence selection (for primer schemes which support this)
• read filtering
• primer trimming
• amplicon coverage normalisation
• variant calling
• consensus building

artic is designed to help run the artic bioinformatics protocols; for example the MPXV fieldbioinformatics SOP.

Use the navigation dropdowns on the left to read more about the pipeline, it's installation and getting started.