artic is a pipeline and set of accompanying tools for working with viral nanopore sequencing data, generated from tiling amplicon schemes.
- read filtering
- primer trimming
- amplicon coverage normalisation
- variant calling
- consensus building
artic is designed to help run the artic bioinformatics protocols; for example the SARS-CoV-2 coronavirus protocol.
Use the navigation dropdowns on the left to read more about the pipeline, it's installation and getting started.