artic is a pipeline and set of accompanying tools for working with viral nanopore sequencing data, generated from tiling amplicon schemes.

Features include:

  • read filtering
  • primer trimming
  • amplicon coverage normalisation
  • variant calling
  • consensus building

artic is designed to help run the artic bioinformatics protocols; for example the SARS-CoV-2 coronavirus protocol.

Use the navigation dropdowns on the left to read more about the pipeline, it's installation and getting started.